![]() ![]() ClusterScan is distributed under the GNU General Public License (GPL) Version 3. We have tested ClusterScan on Ubuntu (v14.04LTS+). If you visualize the ClusterScan help page, you can proceed to run your first analysis by following the ClusterScan Tutorial. To test the clusterscan installation you must open a new terminal and type: clusterscan.py -h ![]() Now, you can download and extract ClusterScan in your preferred directory: wget įinally, you can add ClusterScan in your path by editing your bashrc file: sudo nano ~/.bashrc Then install the required dependencies via pip typing: pip install pandas=0.19.1 ![]() As first step install python setuptools and pip on your distribution: sudo apt install python-pip Now you can install ggplotw with: install.packages("ggplot2")įinally you can test the ggplot installation with: library(ggplot2)ĬlusterScan needs few other Python libraries which can be easily installed via pip from PyPI. ![]() To install R simply type: sudo apt install r-base r-base-devĪnd enter the program with the command: R More informations about the bedtools installation can be found here. To test your bedtools installation you must open a new terminal and type: bedtools -h Scroll until you reach the bottom of the page and add the following string: export PATH=$PATH://bedtools2/bin Once you have finished you can add bedtools to your path opening a new terminal and typing: sudo nano ~/.bashrc To install bedtools you need to download the package via GitHub and compile from source: wget Installing the required Python libraries.In order to draw high quality clusters distributions for features in the top 10 clusters (by number of features) found, it is also required to install the R library ggplot2 (v2.0.0+). Bedtools (v2.25.0+) and R (v3.0.0+) are needed to be in the user path. ![]()
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